Plantcare cis regulatory element database

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August undefined, 2024

WebThe B-box proteins (BBXs) are a family of zinc-finger transcription factors with one/two B-Box domain(s) and play important roles in plant growth and development as well as stress responses. Wolfberry (Lycium barbarum L.) is an important traditional medicinal and food supplement in China, and its genome has recently been released. However, … WebAfter a cis-acting element analysis of the 2000 bp upstream region of forty-seven CsWRKY genes by the PlantCARE, 14 common cis-acting elements were mainly predicted (Supplementary Table S2), as well an evolutionary tree was constructed based on the full-length sequences of CsWRKY TFs . Including the W-box binding site, seven regulatory …

PlantCARE, a database of plant cis-acting regulatory elements and a

WebApr 13, 2024 · Early maturity is an important agronomic trait in most crops, because it can solve the problem of planting in stubble for multiple cropping as well as make full use of light and temperature resources in alpine regions, thereby avoiding damage from low temperatures in the early growth period and early frost damage in the late growth period … WebPlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. PlantCARE، یک پایگاه‌داده از عناصر تنظیم‌کننده فعالیت سیس و یک … cross body bags for women 2022

PlantCARE · bio.tools

WebJan 1, 1999 · PlantCARE, a plant cis -acting regulatory element database Abstract. PlantCARE is a database of plant cis -acting regulatory elements, enhancers and … WebDec 16, 2024 · Cis-regulatory element analysis of StDREB gene promoters. In our recently published study, we identified a total of sixty-six (66) DREB genes in the S.tuberosum genome [].To investigate cis-regulatory elements in promoter regions of 66 StDREB genes, promoter sequences 2.5 kbp upstream of the translational start site (ATG) were retrieved … WebCORG -- A database for COmparative Regulatory Genomics Delineate conserved non-coding blocks from upstream regions of putative orthologous gene pairs from man, mouse, rat, fugu, Mus musculus, Danio rerio, and zebrafish. COXPRESdb -- a database of coexpressed gene networks in mammals Find coexpressed gene lists and networks in human and … buget educatie 2022

PlantPAN 2.0 - NCKU

WebNational Center for Biotechnology Information WebThe Plant Promoter Analysis Navigator (PlantPAN; http://PlantPAN2.itps.ncku.edu.tw) provides an informative resource for detecting transcription factor binding sites (TFBSs), corresponding TFs, and other important regulatory elements (CpG islands and tandem repeats) in a promoter or a set of promoters in plants. buget educatie 2023WebPlantCARE, a database of plant promoters and their cis-acting regulatory elements This web site and its data can be used freely by Academic users. For more details see the In … Search for regulatory element in a dataset of co-regulated promoter sequences ... PlantCARE, a plant cis-acting regulatory element database Stephane Rombauts, … Access and use this Service for non-commercial research purposes only, e.g. … A referential database with: 435 different names of plant transcription sites. 149 … Menu. Other Queries. Classification... Genes... Name of Factor... Name of Site... Banner PlantCARE - Universiteit Gent Site maintained by: Stephane Rombauts ... Site maintained by Stephane Rombauts A referential database with: 435 different names of plant transcription sites. 149 … please only submit fasta formated sequences as pure/simple text files, no … buget center prince albert

"WebOct 14, 2024 · The sequence analysis of cis-acting elements that could possibly be found in the promoter was performed using the plant-CARE online prediction database (plant cis-acting regulatory... " - Plantcare cis regulatory element database

Plantcare cis regulatory element database

PlantCARE, a database of plant cis-acting regulatory elements and …

WebJan 1, 1999 · A database of nucleotide sequence motifs found in plant cis-acting regulatory DNA elements (cis-elements) and a tool for homology searches within such a database …

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WebJan 6, 2024 · The PlantCARE database was used to predict the cis-acting elements upstream 2000 bp of RCI2 gene family in B. napus and ... Van de Peer, Y.; Rouzé, P.; Rombauts, S. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. 2002, 30, 325–327. … WebPlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences Kathleen Marchal P. Rouze 2002, Nucleic Acids Research See Full PDF Download PDF Biotechnology Advances Allele mining in crops: Prospects and potentials 2010 • Sheshu Madhav

WebApr 9, 2024 · The sequences 2000 bp upstream of the start codon were selected as the promoters for cis-regulatory elements analysis. A total of 50 elements were identified in the promoters of CqTPSs and CqTPPs (Figure 3A,B). The cis-acting elements are classified into five categories, including Light Response, Plant Hormone, Plant Growth, Stress Response … WebPlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. PlantCARE، یک پایگاه‌داده از عناصر تنظیم‌کننده فعالیت سیس و یک پورتال برای تحلیل silico توالی راه‌انداز ...

WebPlantCARE - Database Commons Database Commons a catalog of worldwide biological databases e.g., human; SARS-CoV-2; ncRNA; single cell; European Bioinformatics Institute; … WebDec 23, 2024 · The classic mode of action of auxin is mediated by a family of trans-acting transcription factors that specifically bind to auxin response elements (AuxREs) in the …

http://plantpan.itps.ncku.edu.tw/

WebJan 1, 2001 · PLACE: a database of plant cis-acting regulatory DNA elements PLACE (http://www.dna.affrc.go.jp/htdocs/PLACE/) is a database of motifs found in plant cis -acting regulatory DNA elements, all from previously published reports. It … bug etf.comWebDatabase of regulatory factors (transcription factor, histone, and other DNA-binding protein) and binding site ... It is not only efficient to investigate critical cis-and trans-regulatory elements in plant promoters, but also reconstruct high-confidence relationships of TF-targets under a specific condition. Confidently, the PlantPAN 3.0 will ... crossbody bags for women cognacWebJul 15, 2024 · Although the functional mechanisms of many circRNAs have been revealed, how circRNAs are dysregulated in cancer remains elusive. CircRNAs are generated by a “back-splicing” process, which is regulated by different cis-regulatory elements and trans-acting proteins. Therefore, how these cis and trans elements change during … buget football shoulder padsWebPlantCARE, a database of plant promoters and their cis-acting regulatory elements Your browser does not support frames Please download a newer version of your browser … bugetix incWebAll the data generated in the study are available publicly in the Phytozome database of the ... We identified and analyzed the cis-acting elements of the genes by using the PlantCARE database (http ... Moreau Y, Van PY, et al. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter ... crossbody bags for teenagersWebSep 14, 2024 · Such web-based tools as PLACE , PlantCARE , AGRIS , TRANSFAC and PlantPAN have been developed for the analysis of cis regulatory elements in plant genes. Examination of CAREs within the promoter sequences of PR genes as well as their combinatorial effects, will lead to better comprehension of regulation of their gene … buget individual anafWebJan 1, 1999 · PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus … crossbody bags for women australia